Publications
See Google Scholar for all publications.
Selected Publications and Preprints
- Shuxian Zou, Tianhua Tao, Sazan Mahbub, Caleb Ellington, Robin Algayres, Dian Li, Yonghao Zhuang, Hongyi Wang, Le Song, and Eric P. Xing. A large-scale foundation model for RNA function and structure prediction. Under review at Nature Methods. NeurIPS 2024 AIDrugX Workshop (Spotlight). [Paper] [GitHub] [Hugging Face]
- Ning Sun, Shuxian Zou, Tianhua Tao, Sazan Mahbub, Dian Li, Yonghao Zhuang, Hongyi Wang, Xingyi Cheng, Le Song, and Eric P. Xing. Mixture of experts enable efficient and effective protein understanding and design. Under review at Nature Methods. NeurIPS 2024 AIDrugX Workshop (Spotlight). [Paper] [GitHub] [Hugging Face]
- Shuxian Zou, Jiayou Zhang, Bingkang Zhao, Hui Li, Eric P. Xing, and Le Song. Improving RNA 3D Structure Prediction via Language Model-Augmented AlphaFold 3. NeurIPS 2025 MLSB Workshop. [Paper]
- Youhan Lee, Shujun He, Toshiyuki Oda, …, Shuxian Zou, …, David Baker, …, Rhiju Das. Template-based RNA structure prediction advanced through a blind code competition. Accepted in principle at Nature Methods. [Paper]
- Caleb Ellington, Dian Li, Shuxian Zou, Elijah Cole, Ning Sun, Sohan Addagudi, Le Song, and Eric P. Xing. Rapid and Reproducible Multimodal Biological Foundation Model Development with AIDO.ModelGenerator. ICML 2025 GenBio Workshop (Spotlight). [Paper] [GitHub]
- Shuxian Zou, Hui Li, Shentong Mo, Xingyi Cheng, Eric P. Xing, and Le Song. Linker-Tuning: Optimizing Continuous Prompts for Heterodimeric Protein Prediction. arXiv preprint, 2023. [Paper]
- Shuxian Zou, Shaonan Wang, Jiajun Zhang, and Chengqing Zong. Cross-Modal Cloze Task: A New Task to Brain-to-Word Decoding. Findings of ACL 2022, pp. 648–657. [Paper] [GitHub]
- Shuxian Zou, Shaonan Wang, Jiajun Zhang, and Chengqing Zong. Towards Brain-to-Text Generation: Neural Decoding with Pre-trained Encoder-Decoder Models. NeurIPS 2021 AI for Science Workshop, Dec 13, 2021. [Paper]